The notes of Juan R. Gonzalez-Alvarez, concerned with the discussion about international project of the revision of the present system of scientific publications and estimation of scientific papers in the russian journal Chemistry and Life

The International Project of the Revision of the Present System
of the Publication and Estimation of Scientific Papers.

The notes of Juan R. Gonzalez-Alvarez, concerned with the discussion about international project of the revision of the present system of scientific publications and estimation of scientific papers in the russian journal "Chemistry and Life"

Comment on "Science without denominations", "Chemistry and Life" 2005, 5, 6-10.

First, I would acknowledge to Professor Georgiy Vasilievich Lisichkin (chief of organic catalysis laboratory, Chemical Department of Moscow State University and editor-in-chief of the journal Journal of Russian Chemical Society/D.I. Mendeleev) his interesting and valuable comments on
Shagaev and me project stated and explained in above article.
My partial criticism (we agree in several points) begins with Vasilievich's phrase "The review process is the basis of a good journal". I would prefer another more accurate statement like "Good review process is one of the basis of a good journal".
Time delay

The problem with time delay of papers is a common problem in several disciplines. It is a complex problem, which embraces the whole of the editorial process, from initial review of manuscripts, to the physical travel of print volumes of published journals to the different countries in the world. High temporal delay of publications is not a problem exclusive of low-resource journals like Vasilievich suggest, but is clearly increased.
Would the reduction to 3-4 month of temporal delay would be sufficient for readers as appears to suggest Vasilievich? Our project reflect the belief of many scientists. When one asks what then is so essential about the new electronic preprints to its users, the immediate answer is "Well, it's
obvious. It gives instant communication, without having to wait a few months for the peer review process."
Vasilievich's proposals on "editorial" or "economic" time delay are interesting but do not address the most dangerous aspect of time delay:
"forced" time delay of revolutionary theories and models that contradict usual accepted thinking. This is also a recent problem with ArXiv as recently denunciated by Nobel Laureate Brian Josephson in Nature journal:
"Vital resource should be open to all physicists" Nature 433, 800 (24 February 2005). A novel form of time delay can be the original ArXiv endorsement system.
Let me use one of Josephson's main points, "Putting control in the hands of a few can enforce orthodoxy and stifle innovative ideas", like support of our proposals for a new, more rational, model of scientific publication.
As Nobel Laureate J. Steinberger had rightfully observed "new ideas are not completely easy to accept, sometimes even by the brightest and most open of people". Einstein's rejection of quantum mechanics is legendary. Some scientific contributions are effectively silenced and prevented from being published for years or even decades. One of most radical cases that
I know was that of an article that appeared in 1957 in the Journal of the American Chemical Society, 25 years after it was initially submitted.

About reviewers

I can only partially agree that reviewers are specially selected scientists that have highest qualification because, sometimes, one can see from received reviewer's reports that he/she is not a clear specialist in the topic of the paper that you are preparing. Many scientists, referees,
and editors will agree with me. Still one would recognize that reviewers are often "specialists" in mainstream knowledge and, this is an important point, review new material in the basis of that mainstream knowledge.
Studies show that, at least in 36 occasions, future Nobel Laureates encountered resistance on part of scientific journal editors or referees to manuscripts that dealt with discoveries that on later date would assure them the Nobel Prize. These important discoveries were "premature", in the
sense that they did not fit in the common paradigms, and/or their implications could not be connected by a series of simple logical steps to the existing scientific knowledge. Usual peer review process fails clearly here.
Roald Hoffmann, Nobel Laureate in Chemistry, has pointedly observed, "in the course of this refereeing process there are incredibly irrational responses unleashed by perfectly good and otherwise rational scientist". Would not the standard model of scientific publication be the most
rational possible? Our proposal advances in that way, eliminating or minimizing the obvious failures of current model.
Since Vasilievich centers his comments in the chemical field, I would be a pleasure for me remember to him the difficulties experienced by Henry Eyring to publish his classic 1935 paper on the activated complex in chemical reactions and the role played by those "selected scientists" in the delay of the advance of chemistry.
It begins to be admitted by an increasing number of scientists, specialists in publication and information science, and editors that unusual status of present science (without the sound revolutions of past, remember relativity theory or quantum mechanics) is the direct outcome of
the rigid model of peer review of the second middle of last century. In fact, the Nobel laureate for physics Brian Josephson has appointed that Einstein relativistic theory would be blocked from ArXiv if Einstein submitted it today, simply by a question of inadequate affiliation to
academia. Previous editor-in-chief of Nature journal, John Maddox, has said that Newton gravitation theory would be now rejected for peer review publication because "it was too ambitious" one. Is that, the future for science that we desire?
Vasilievich argues that the selection of two different reviewers in serious scientific journals prevents any subjectivism. Let me a counterexample of why the method is subjective; often the same (exactly the same) paper is submitted to two different journals and in one of them
the manuscript is rejected like wrong or inadequate whereas is accepted with complaints in the other. If this is not subjectivism, then I do not know that can be.
Vasilievich adds, "Only the system of careful review is the basis of good reputation of the journal." I think that one would not mix "good reputation of the journal" with high-quality papers or first-class science. Paul Ginsparg (from Cornell University) one of indisputable
leaders on new models of scientific communication:
"When faculty members are polled formally or informally regarding peer review, the response is frequently along the lines -"Yes, of course, we need it precisely as currently constituted because it provides a quality control system for the literature, signaling important contributions, and hence necessary for deciding job and grant allocations." But this conclusion relies on two very strong implicit assumptions:
a) that the necessary signal results directly from the peer review process itself, and
b) that the signal in question could only result from this process. The question is not whether we still need to facilitate some form of quality control on the literature; it is instead whether given the emergence of new technology and dissemination methods in the past decade, is the
current implementation of peer review still the most effective and efficient means to provide the desired signal?
Appearance in the peer-reviewed journal literature certainly does not provide sufficient signal [...] It is therefore both critical and timely to consider whether modifications of existing methodology can lead to a more functional or less costly system for research communication."
Review would be non-anonymous by a simple question of consistency. Review is a crucial piece of publication of new ideas in science. We cannot leave this important piece of the mechanism in anonymous hands, especially when anonymity is used for rejecting alternative theories. If a review report is well done, the reviewer may be proud of his report, independently of if he/she is correct or wrong. All scientists do errors. The idea of that authors can do errors but referees are infallible cannot be sustained. I would note that this bizarre idea is implicit in the anonymous peer review process.
I would agree with Vasilievich that the possibility for anonymous report could be considered for some review reports, but reviewers would provide support of his/her plea and authors would accept or reject anonymous referee after of reading the report. For instance, if the report is well
balanced, I am sure that many authors simply will reply it, but if there are clear signs of "distortion" of main ideas of author's paper or a completely wrong report, the author would claim that referee signs his/her report. This new feature would impede well-knows cases of abuse from anonymous referees for rejecting alternative points of view to referees own ones.
Referee could choose to sign the report or no, but the author of the problematic paper cannot be obligated to accept any anonymous review report. All I am saying is based in experience with current system of publication in paper journals. The rejecting of alternative nonstandard
ideas has been also documented by physicists in the case of ArXiv, where erasing of "dangerous" papers is done in an anonymous form by "administrators" of the service.
I, as many other scientists and studiers of topic, clearly disagree with Vasilievich idea it is easier to publish a revolutionary paper now, in comparison with 50 years ago. I have provided abundant data and claims by well-informed and highly respected scientists and editors in several
publications, letters, and others in the contrary view, before this project with Shagaev. Some of those works were available on the chemical preprint server but unfortunately was force to close. I wait to post some of that material in the web of the Center for CANONICAL |SCIENCE) in a
future.
A small quote would fix the status of peer review model (Brown, Cecelia JOURNAL OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE AND TECHNOLOGY,
54(5): 362-371, 2003):
"Challengers of the peer review system question whether it fairly and equitably allows all researchers to participate in the discourse of the scientific community (Foltz, 2000). The CPS levels the playing field by providing an outlet for novice or nontraditional chemists who have
difficulty breaking into the established social milieu of chemistry. [...] Furthermore, posting of nonmainstream research allows readers the chance to see new and innovative work, which may never reach the journal literature. The controversy about peer review may in part be quelled by
the use of e-print servers that do not "depend exclusively on the oxygen of peer review" (Cronin & McKim, 1996), but instead revolve around a platform of free, open, and dynamic discussion of research."

Not only it is clearly impossible to publish some truly revolutionary ideas in several typical journals of physics or chemistry, moreover, even certain research activities before publication are restricted or do not permitted by the "mainstream". For a view on the awful status of research
in high-energy physics, I recommend the reading of (physics/0102051). An excerpt is next provided:
"Graduate students, post-docs and untenured junior faculty interested in physics beyond the Standard Model are under tremendous pressures in a brutal job market to work on the latest fad in string theory, especially if they are interested in speculative and mathematical research. For them, the idea of starting to work on an untested new idea that may very well fail looks a lot like a quick route to professional suicide. Many physics researchers do not believe in string theory but work on it anyway."

Multidisciplinary science is absent

The claim of publication of papers devoted to any field of chemistry is interesting but it appears to be more the typical publication of separate papers in different fields related to that called "chemistry" that to the publication of related papers in the style of an unified revolutionary
multidisciplinary scientific theory like canonical science. It is very unlikely that any actual typical journal of science can provide adequate support to the point of real interdisciplinary research and publication. In fact, even the current organization of science in "separated" fields is
misleading the interesting point of that Nature is unified. Take like an example the founding of the famous Santa Fe Institute for studies in complex systems, with the objective of abolishing the serious problems of usual packet research on a new, advanced concept of science research.
Why open publication and review

Like a member of scientific community, I want know, when, how, and why a paper is rejected/accepted, and what is the scientific basis for such one reject/acceptation.
Vasilievich states, "one can confidently assert that the quality of electronic journals will be formed by the level of its reviewers (by specialists, exactly, but not by the voting of readers as offering the project authors). The truth isn't determined by a majority vote."
These claims are surprising for me. Next, some comments on it.
1) The quality of an electronic repository (e.g. ArXiv) is based in the quality of papers/preprints that it contains. Take for example, the current main physics archive of preprints, it is considered in so high-quality that the direct citing on top high quality journals like Physical Review is permitted. In fact, the model is so satisfactory that many physicists claim that rarely read usual "old" printed peer review journals. Let me remark a very important point that suggests that our
project may be correct: there is no formal reviewer procedure in the electronic archive of physics works! C. Brown describes the additional concern expressed by the editors of chemical journals with the point of that electronic preprint was not peer reviewed, but correctly points to
the status of peer review on other scientific fields: "perhaps chemists will begin to adopt the proactive attitude of physicists and astronomers who are not concerned about the lack of peer review in arXiv.org and SPRIES."
2) Instead of "vote", I claim for minimum review/comment procedure, and that procedure, including review reports may be open to all member of scientific community that want review a paper. The concept of specialist is rather subjective. I am obligated to quote now the well-known Feynman phrase that one would often ignore to the so-called specialists. History shows that Feynman himself suffered the cruel accuracy of this phrase in his own body when openly claimed that violation of parity was impossible in nature and years after that physical process was discovered in experiment and a Nobel Prize awarded. Nobody doubt that Feynman was one of most important physicists of 20th century, an authentic specialists in many fields of physics, but he was simply wrong in that point.
3) We would agree that a few "specialists" do not say the last word about the accuracy/inaccuracy of a published paper. Specialist's view is, of course, really important but it is not definitive and would be dangerous leave the future of science in the hands of a few of them, when history of science sensibly recommend to us to do the contrary. It is notorious that
almost all specialists in physics rejected the law of conservation of energy and only after of decades a new generation of physicists recognized the grave error of their predecessors. There are dozens and dozens of examples from Newton (broadly rejected by specialists) to Zewail (Nobel laureate for chemistry 1999). Zewail recalls that many of his chemical colleagues thought that coherence was irrelevant to chemistry. How wrong they were! [Chem. Commun. 2002, 2185.]

Juan R. Gonzalez-Alvarez

Director and founder of the Center for CANONICAL |SCIENCE)
Chief of the canonical science project
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